The RNAs and Proteins of dsRNA Viruses

 

Edited by Peter. P. C. Mertens, Houssam Attoui and Dennis H. Bamford

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The conserved RNA termini  of the +ve RNA strands

of different species of the family  Reoviridae

Virus species Virus strain Conserved Terminal regions  Accession numbers and/or references **
Orthoreovirus species
Mammalian orthoreovirus (MRV)   5'-GCUA................................UCAUC-3'  
Avian orthoreovirus (ARV)   5'-GCUUUUU........................UCAUC-3'  
Nelson Bay orthoreovirus  (NBV)   5'-GCUUUA.........................UCAUC-3'  
Baboon orthoreovirus (BRV)   5'-GUAAAUUU....................UCAUC-3'  
Reptillian orthoreovirus (RRV)   5'-GUUAUUUU.....................UCAUC-3'  
 Rotavirus species
Rotavirus A SA11 5'-GGC A/U A/UU A/U A A/U A/U...........................A/UU G/U G/U G/U A/GCC-3'  
Rotavirus B   5'-GGC C/U A/UN A/U A A/U A/U A/U A/U A/U...........A/UA/U AA G/AACCC-3'  
Rotavirus C Bristol 5'-GGCCA/U A/U A/U A/U A/UA/U A/U...........................................UGUGGCU-3'  
 Orbivirus species

Bluetongue virus  (BTV)

 
5'-GUUAAA............................ACUUAC-3'
 
African horse sickness virus 
 (AHSV)

 

5'-GUU A/U A A/U.................AC A/U UAC-3'

 

Epizootic hemorrhagic disease virus 
(EHDV)

 

5'-GUUAAA............…..........A/G CUUAC-3'

 

Great Island virus  (GIV)

Broadhaven virus

(BRDV)

5'-GUAAAA...................…..AA/GGAUAC-3'

 

Palyam virus  (PALV)

Chuzan virus

(CHUV)

5'-GU A/U AAA.....................A/G CUUAC-3'

 

 

Equine encephalosis virus  (EEV)

 

5'-GUUAAG........…...........…...UGUUAC-3'

 

St Croix River virus  (SCRV)

 

5'-A/G UAAU G/A/U.......G/A/U C/U C/A UAC-

 

Peruvian horse sickness virus 
(PHSV) 

 

5'-GUUAAAA..….....…..A/G C/G A/GUAC-3'

 

Yunan orbivirus  (YUOV)

 

5’-GUUAAAA…....….........…….A/G UAC-3’

 

Seadornavirus species
Banna virus (BAV)   5' -GUAU A/U A/U A A/U A/U A/U U.......C C/U GAC-3'  
Kadipiro virus (KDV)   5' -GUAGAA A/U A/U A/U A/U ..................C/U GAC-3'  
Liao ning virus  (LNV)   5' -GUUAU A/U A/U A/U ....................C/U C/U GAC-3'  
Aquareovirus species
Aquareovirus A   5'-GUUUUAU/G..........................A/UUCAUC-3'  
Aquareovirus B   5'-UUUAGTC..............................UACCAAC-3' U90430
Aquareovirus C   5'-GUUAUUU...........................A/UUUCAUC-3'  
Aquareovirus D      
Aquareovirus E      
Aquareovirus F      

Cypovirus species

Cypovirus 1  (CPV-1 )

(BmCPV-1)

5'-AGUAA...................GUUAGCC-3’

D37768 , D37769 , M19112  , D37771,  D37770, M19112, AB003361, AB003360,

(3, 8)

(DpCPV-1)

5'-AGUAA...................GUUAGCC-3'

AY211094,  AY248699, AY204880 , AY204878, AY204879, AF318306,  (1, 2)

 (LdCPV-1)

5'-AGUA/GA/G…….....GU/CUAGCC-3'

NC_003025, AF389471,

Cypovirus 2  (CPV-2 )

 (IiCPV-2)

5'-AGUUUUA……........UAGGUC-3'

Rao Unpublished

Cypovirus 4  (CPV-4)*  (ApCPV-4)*

5'-AAUCGACG........GUCGUAUG-3'

AY212276

 (AaCPV-4)*

5'-AAUCGACG......GUCGUAUG-3'

AY212275

 (AmCPV-4)*

5'-AAUCGACG......GUCGUAUG-3'

AY212274, AY212273

Cypovirus 5   (CPV-5)  (OpCPV-5)

5'-AGUU.............................UUGC-3'

U06194 

(5)

 (EsCPV-5)*

5’ AGUUUAA……… GAGUUGC-3’

J04338

 (HaCPV-5)*

5’ AGUUUAA……… GAGUUGC-3’

U06196

 (NaCPV(b)-5)*

 

Rao Unpublished

Cypovirus 14  (CPV-14 )

  (LdCPV-14)

5'-AGAA...........................CAGCU-3'

NC_003015, AF389461

 (PxCPV-14)

5'-AGAAUUUU.........UUCAGCU-3'

Rao Unpublished

Cypovirus 15  (CPV-15)

 (TnCPV-15) *

5'-AUUAAAAA…….…...........GC-3'

NC_002565, AF291692, AF176320, U95954

Cypovirus 16  (CPV-16)

(CfCPV-16) *

5'-AGUUUUU............UUUGUGC-3'

U95954 ,

(4)

Cypovirus 17   (CPV-17)

 (UsCPV-17)

5'-AGAACUU...........GUUACACU-3'

AY876384

 (6)

 (CrCPV-17)

5’-AGAACAAA………CUACACU-3’

Rao Unpublished 

 (7)

Cypovirus 18

 (CPV-18,  Proposed)

 (ObCPV-18)

5'-AGUAAA G/U/A C/U..........U/CA/CGUUAGCU-3'

Graham et al, 2006 (9)

 

Seg5, DQ192245

Seg6, DQ192246

Seg7, DQ192247

Seg8, DQ192248

Seg-9 DQ192249

Seg-10  DQ192250

Cypovirus 19

 (CPV-19, Proposed)

 (ObCPV-19)

5'-AACAAA A/U A/U...........A/U G A/UUUUGC-3'
 

Graham et al, 2006 (9)

 

Seg 2, DQ192251

Seg5, DQ192252

Seg-9 DQ192253,

Seg-10  DQ192254

Cypovirus 20 

(CPV-20, Proposed)

(SuCPV - 20)*

5’-AGAAAAC…………CAUGGC-3’

Green et al submitted (10)

Cypovirus 21

 (CPV-21, Proposed)

 (MvCPV-21)*

5'-AUAUAAUU..........AGUUAGU-3'

Rao Unpublished

Dinovernavirus Species (Proposed)

Dinovernavirus 1

(Aedes pseudoscutellaris reovirus)

 

(APRV)

 

5’-aguuA/UaannnA/CA/C------U/GuunnnC/UnnA/Uagu-3’

Attoui et al 2005

 

Seg 1, DQ08276,

Seg 2, DQ08277,

Seg 3, DQ08278,

Seg 4, DQ08279,

Seg 5, DQ08280,

Seg 6, DQ08281,

Seg 7, DQ08282,

Seg 8, DQ08283

Seg 9, DQ08284

Unclassified viruses
       

Table created by Peter Mertens and Shujing Rao                

 

Conserved termini are shown highlighted in Blue 

* :  Nucleotides shown underlined are for one segment only (segment 10 unless otherwise stated). Based on genome segment 9 only of ApCPV-4, AaCPV-4, AmCPV-4

** See also www.reoviridae.org/dsRNA_virus_proteins/cypovirus-accession-nos-.htm

 

       References      

 1)      Hong JJ, Duan JL, Zhao SL, Xu HG, Peng HY. (2004) Nucleotide sequences of genome segments S6, S7 and S10 of Dendrolimus punctatus cypovirus 1. Archives of  Virology. 149, 183-90.

2)      Zhao SL, Liang CY, Hong JJ, Xu HG, Peng HY. (2003Molecular characterization of segments )7-10 of Dendrolimus punctatus cytoplasmic polyhedrosis virus provides the complete genome. Virus Research. 94, 17-23.

3)      Ikeda K, Nakazawa H, Alain R, Belloncik S, Mori H (1998) Characterizations of natural and induced polyhedrin gene mutants of Bombyx mori cytoplasmic polyhedrosis viruses. Archives of  Virology 143, 241-8.

4)      Echeverry F, Bergeron J, Kaupp W, Guertin C, Arella M. (1997) Sequence analysis and expression of the polyhedrin gene of Choristoneura fumiferana cytoplasmic polyhedrosis virus (CfCPV). Gene. 198, 399-406.

 5)      Galinski MS, Yu Y, Heminway BR, Beaudreau GS. 1(994) Analysis of the C-polyhedrin genes from different geographical isolates of a type 5 cytoplasmic polyhedrosis virus. Journal of General Virology 75 :1969-74.

 6)      Alexandra Shapiro, Terry Green, Shujing Rao, Susan White, Gerry Carner, Peter P. C. Mertens, James Becnel (2005) Morphological and molecular characterization of a cypovirus (Reoviridae) from the mosquito Uranotaenia sapphirina (Diptera: Culicidae) Journal of Virology 79, 9430-9438.

 7)      Green TB, Shapiro A, White S, Rao S, Mertens PP, Carner G, Becnel JJ.  (2006) Molecular and biological characterization of a Cypovirus from the mosquito Culex restuans. Journal of Invertebrate Pathology 91, 27-34. .

 8)      Lavallee C, Arella M, Belloncik S, Furuichi Y. (1993) Expression in Escherichia coli of the cloned polyhedrin gene of Bombyx mori cytoplasmic polyhedrosis virus. Protein Expression and purification 4, 570-9.

9) Graham RI, Rao S, Possee RD, Sait SM, Mertens PP, Hails RS. (2006)  Detection and characterisation of three novel species of reovirus (Reoviridae), isolated from geographically separate populations of the winter moth Operophtera brumata (Lepidoptera: Geometridae) on Orkney. Journal of  Invertebrate Pathology 91:79-87.

10) Terry B. Green, Susan White, Shujing Rao, Peter P. C. Mertens,  Peter H. Adler, James J. Becnel  (submitted) Biological and Molecular Studies of a Cypovirus from the Blackfly Simulium ubiquitum (Diptera: Simuliidae) (submitted).

11)  Attoui H, Mohd Jaafar F, Belhouchet M, Biagini P, Cantaloube JF, de Micco P, de Lamballerie X. (2005) Expansion of family Reoviridae to include nine-segmented dsRNA viruses: isolation and characterization of a new virus designated Aedes pseudoscutellaris reovirus assigned to a proposed genus (Dinovernavirus). Virology. 343, 212-23.

 

 

 

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(The RNAs and Proteins  of dsRNA Viruses:  Edited by Peter. P. C. Mertens, Houssam Attoui and Dennis H. Bamford)