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[ protein-comparison ] [ Birnaviridae ] [ Cystoviridae ] [ Reoviridae ] [ Totiviridae ]
The
conserved RNA termini of the +ve RNA strands
of different species
of the family Reoviridae
|
Virus
species |
Virus strain
|
Conserved
Terminal regions |
Accession
numbers and/or references ** |
|
Orthoreovirus species |
|
Mammalian orthoreovirus (MRV) |
|
5'-GCUA................................UCAUC-3' |
|
|
Avian orthoreovirus (ARV) |
|
5'-GCUUUUU........................UCAUC-3' |
|
|
Nelson Bay orthoreovirus
(NBV) |
|
5'-GCUUUA.........................UCAUC-3' |
|
|
Baboon orthoreovirus (BRV)
|
|
5'-GUAAAUUU....................UCAUC-3' |
|
|
Reptillian orthoreovirus
(RRV) |
|
5'-GUUAUUUU.....................UCAUC-3' |
|
|
Rotavirus species |
|
Rotavirus A |
SA11 |
5'-GGC
A/U A/UU
A/U A
A/U A/U...........................A/UU
G/U G/U G/U
A/GCC-3' |
|
|
Rotavirus B |
|
5'-GGC
C/U A/UN A/U
A A/U
A/U A/U A/U
A/U...........A/UA/U
AA G/AACCC-3' |
|
|
Rotavirus C |
Bristol |
5'-GGCCA/U
A/U A/U A/U
A/UA/U A/U...........................................UGUGGCU-3' |
|
|
Orbivirus species |
|
Bluetongue virus (BTV) |
|
5'-GUUAAA............................ACUUAC-3'
|
|
African horse sickness virus
(AHSV)
|
|
5'-GUU A/U A A/U.................AC A/U UAC-3'
|
|
Epizootic hemorrhagic disease virus
(EHDV)
|
|
5'-GUUAAA............…..........A/G CUUAC-3'
|
|
Great Island virus (GIV) |
Broadhaven virus
(BRDV) |
5'-GUAAAA...................…..AA/GGAUAC-3'
|
|
Palyam virus (PALV)
|
Chuzan virus
(CHUV) |
5'-GU A/U AAA.....................A/G CUUAC-3'
|
|
Equine encephalosis virus (EEV)
|
|
5'-GUUAAG........…...........…...UGUUAC-3'
|
|
St Croix River virus (SCRV)
|
|
5'-A/G UAAU G/A/U.......G/A/U C/U C/A UAC-3’
|
|
Peruvian horse sickness virus
(PHSV)
|
|
5'-GUUAAAA..….....…..A/G C/G A/GUAC-3'
|
|
Yunan orbivirus (YUOV)
|
|
5’-GUUAAAA…....….........…….A/G UAC-3’
|
|
|
Seadornavirus species |
|
Banna virus
(BAV) |
|
5' -GUAU
A/U A/U
A
A/U A/U A/U U.......C
C/U GAC-3' |
|
|
Kadipiro virus
(KDV) |
|
5' -GUAGAA
A/U A/U A/U
A/U
..................C/U
GAC-3' |
|
|
Liao ning virus (LNV) |
|
5' -GUUAU
A/U A/U A/U
....................C/U C/U
GAC-3' |
|
|
Aquareovirus
species |
| Aquareovirus A |
|
5'-GUUUUAU/G..........................A/UUCAUC-3' |
|
| Aquareovirus B |
|
5'-UUUAGTC..............................UACCAAC-3' |
U90430 |
| Aquareovirus C |
|
5'-GUUAUUU...........................A/UUUCAUC-3' |
|
| Aquareovirus D |
|
|
|
| Aquareovirus E |
|
|
|
| Aquareovirus F |
|
|
|
|
Cypovirus species
|
|
Cypovirus 1
(CPV-1 ) |
(BmCPV-1)
|
5'-AGUAA...................GUUAGCC-3’ |
D37768 ,
D37769 ,
M19112 ,
D37771, D37770,
M19112,
AB003361,
AB003360,
(3, 8)
|
| (DpCPV-1) |
5'-AGUAA...................GUUAGCC-3' |
AY211094, AY248699,
AY204880 ,
AY204878,
AY204879,
AF318306, (1, 2)
|
| (LdCPV-1) |
5'-AGUA/GA/G…….....GU/CUAGCC-3' |
NC_003025,
AF389471, |
|
Cypovirus 2
(CPV-2 ) |
(IiCPV-2) |
5'-AGUUUUA……........UAGGUC-3'
|
Rao Unpublished |
|
Cypovirus 4
(CPV-4)* |
(ApCPV-4)* |
5'-AAUCGACG........GUCGUAUG-3' |
AY212276 |
| (AaCPV-4)* |
5'-AAUCGACG......GUCGUAUG-3' |
AY212275 |
| (AmCPV-4)* |
5'-AAUCGACG......GUCGUAUG-3' |
AY212274,
AY212273 |
|
Cypovirus 5
(CPV-5)
|
(OpCPV-5) |
5'-AGUU.............................UUGC-3' |
U06194
(5)
|
| (EsCPV-5)* |
5’
AGUUUAA……… GAGUUGC-3’ |
J04338 |
| (HaCPV-5)* |
5’
AGUUUAA……… GAGUUGC-3’ |
U06196 |
| (NaCPV(b)-5)* |
|
Rao Unpublished |
|
Cypovirus 14 (CPV-14
) |
(LdCPV-14) |
5'-AGAA...........................CAGCU-3' |
NC_003015,
AF389461 |
|
(PxCPV-14) |
5'-AGAAUUUU.........UUCAGCU-3' |
Rao Unpublished |
|
Cypovirus 15 (CPV-15)
|
(TnCPV-15) * |
5'-AUUAAAAA…….…...........GC-3' |
NC_002565,
AF291692,
AF176320,
U95954 |
|
Cypovirus 16
(CPV-16) |
(CfCPV-16) * |
5'-AGUUUUU............UUUGUGC-3' |
U95954 ,
(4)
|
|
Cypovirus 17
(CPV-17) |
(UsCPV-17) |
5'-AGAACUU...........GUUACACU-3' |
AY876384
(6)
|
|
(CrCPV-17) |
5’-AGAACAAA………CUACACU-3’ |
Rao Unpublished
(7) |
|
Cypovirus 18
(CPV-18, Proposed)
|
(ObCPV-18) |
5'-AGUAAA G/U/A C/U..........U/CA/CGUUAGCU-3'
|
Graham et al, 2006 (9)
Seg5,
DQ192245
Seg6,
DQ192246
Seg7,
DQ192247
Seg8,
DQ192248
Seg-9
DQ192249
Seg-10
DQ192250 |
|
Cypovirus 19
(CPV-19, Proposed)
|
(ObCPV-19) |
5'-AACAAA A/U
A/U...........A/U G A/UUUUGC-3'
|
Graham et al, 2006 (9)
Seg 2,
DQ192251
Seg5,
DQ192252
Seg-9
DQ192253,
Seg-10
DQ192254 |
|
Cypovirus 20
(CPV-20, Proposed) |
(SuCPV - 20)* |
5’-AGAAAAC…………CAUGGC-3’ |
Green et al submitted (10) |
|
Cypovirus 21
(CPV-21, Proposed) |
(MvCPV-21)* |
5'-AUAUAAUU..........AGUUAGU-3' |
Rao Unpublished |
|
Dinovernavirus Species
(Proposed) |
|
Dinovernavirus 1
(Aedes pseudoscutellaris
reovirus) |
(APRV)
|
5’-aguuA/UaannnA/CA/C------U/GuunnnC/UnnA/Uagu-3’ |
Attoui et al 2005
Seg 1,
DQ08276,
Seg 2,
DQ08277,
Seg 3,
DQ08278,
Seg 4,
DQ08279,
Seg 5,
DQ08280,
Seg 6,
DQ08281,
Seg 7,
DQ08282,
Seg 8,
DQ08283,
Seg 9,
DQ08284 |
|
Unclassified
viruses |
|
|
|
|
|
Table created by Peter Mertens and Shujing Rao
Conserved termini are shown highlighted in Blue
* : Nucleotides shown underlined are for one segment only (segment 10 unless
otherwise stated). Based on genome segment 9 only of ApCPV-4, AaCPV-4, AmCPV-4
** See also
www.reoviridae.org/dsRNA_virus_proteins/cypovirus-accession-nos-.htm
References
1)
Hong JJ, Duan JL, Zhao SL, Xu HG, Peng HY. (2004) Nucleotide sequences of
genome segments S6, S7 and S10 of Dendrolimus punctatus cypovirus 1. Archives
of Virology. 149, 183-90.
2)
Zhao SL, Liang CY, Hong JJ, Xu HG, Peng HY. (2003Molecular characterization
of segments )7-10 of Dendrolimus punctatus cytoplasmic polyhedrosis virus
provides the complete genome. Virus Research. 94, 17-23.
3)
Ikeda K, Nakazawa H, Alain R, Belloncik S, Mori H (1998) Characterizations
of natural and induced polyhedrin gene mutants of Bombyx mori cytoplasmic
polyhedrosis viruses. Archives of Virology 143, 241-8.
4)
Echeverry F, Bergeron J, Kaupp W, Guertin C, Arella M. (1997) Sequence
analysis and expression of the polyhedrin gene of Choristoneura fumiferana
cytoplasmic polyhedrosis virus (CfCPV). Gene. 198, 399-406.
5)
Galinski MS, Yu Y, Heminway BR, Beaudreau GS. 1(994) Analysis of the
C-polyhedrin genes from different geographical isolates of a type 5 cytoplasmic
polyhedrosis virus. Journal of General Virology 75 :1969-74.
6)
Alexandra Shapiro, Terry Green, Shujing Rao, Susan White, Gerry Carner,
Peter P. C. Mertens, James Becnel (2005) Morphological and molecular
characterization of a cypovirus (Reoviridae) from the mosquito Uranotaenia
sapphirina (Diptera: Culicidae) Journal of Virology 79,
9430-9438.
7)
Green TB, Shapiro A, White S, Rao S, Mertens PP, Carner G, Becnel JJ. (2006)
Molecular and biological characterization of a Cypovirus from the mosquito Culex
restuans. Journal of Invertebrate Pathology 91, 27-34. .
8)
Lavallee C, Arella M, Belloncik S, Furuichi Y. (1993) Expression in
Escherichia coli of the cloned polyhedrin gene of Bombyx mori cytoplasmic
polyhedrosis virus. Protein Expression and purification 4, 570-9.
9)
Graham RI, Rao S, Possee RD, Sait SM, Mertens PP, Hails RS. (2006)
Detection and characterisation of three novel species of reovirus (Reoviridae),
isolated from geographically separate populations of the winter moth Operophtera
brumata (Lepidoptera: Geometridae) on Orkney. Journal of Invertebrate
Pathology 91:79-87.
10) Terry B. Green,
Susan White, Shujing Rao, Peter P. C. Mertens, Peter H. Adler, James J. Becnel
(submitted) . Biological and Molecular
Studies of a Cypovirus from the Blackfly Simulium ubiquitum (Diptera:
Simuliidae) (submitted).
11)
Attoui H, Mohd Jaafar F, Belhouchet M, Biagini P, Cantaloube JF, de Micco P, de
Lamballerie X. (2005) Expansion of family Reoviridae to include
nine-segmented dsRNA viruses: isolation and characterization of a new virus
designated Aedes pseudoscutellaris reovirus assigned to a proposed genus (Dinovernavirus).
Virology. 343, 212-23.
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